Computing

Biographical Details:

Dimitri Perrin received his M.Sc. in Computing (2005) from Institut Superieur d'Informatique de Modelisation et de leurs Applications (ISIMA, Clermont-Ferrand, France), his M.Sc. in Models, Systems, Intelligence (2005) from Universite Blaise Pascal (Clermont-Ferrand, France), and his Ph.D. in Computing (2008) from Dublin City University.

Research Interests:

Research interests and expertise include Complex Systems modelling, (with a particular focus on large-scale models, e.g. infection progression models, epigenetic mechanisms, human interactions), Computational Biology and Bioinformatics, Parallel Computing and applications, and novel techniques for large dataset analysis, (e.g. DNA microarray, SNP).

Selected Peer Reviewed Journals

• Kerr G, Perrin D, Ruskin HJ, Crane M. 2008. Edge weighting of gene expression graphs (under review).
• Perrin D, Burns J. 2008. Large-scale immune models and visualization. Ercim News, 74, , pp33-34.
• Perrin D, Ruskin HJ, Crane M. 2008. Large-scale agent-based immune models and inclusion of localised features (under review).
• Perrin D, Ruskin HJ, Crane M, Walshe R. 2008. Epigenetic modelling. Ercim News, 72, , pp46-46.
• Perrin D. 2006. Agent-Based Modelling of Viral Infection. Ercim News, 64, , pp50-51.
• Perrin D, Ruskin HJ, Burns J, Crane M. 2006. An agent-based approach to immune modelling. Lecture Notes In Computer Science, 3980, , pp612-621.

Selected Chapters

• Perrin D, Ruskin HJ, Crane M. 2009. In silico Biology: making the most of parallel computing (accepted for publication). Handbook of Research on Biocomputation and Biomedical Informatics: Case Studies & Applications

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• Perrin D, Ruskin HJ, Crane M, Inclusion of localised patterns in a large-scale agent-based model of the immune response to HIV infection, Sixteenth Annual International Conference Intelligent Systems for Molecular Biology (ISMB2008), 19-JUL-08 - 23-JUL-08, Toronto, Canada
• Porwal J, Ruskin HJ, Perrin D, Roche D, Microscopic model of epigenetic mechanisms, XX International Congress of Genetics, 12-JUL-08 - 17-JUL-08, Berlin, Germany
• Perrin D, Ruskin HJ, The case for epigenetic modelling , XX International Congress of Genetics, 12-JUL-08 - 17-JUL-08, Berlin, Germany
• Perrin D, Ruskin HJ, Crane M, Towards epigenetic modelling: an initial map, IET BioSysBio 2008, Synthetic Biology, Systems Biology and Bioinformatics, 20-APR-08 - 22-APR-08, London, UK
• Perrin D, Ruskin HJ, Crane M , The case for epigenetic modelling, IARC meeting on cancer and epigenetics, 06-DEC-07 - 07-DEC-07, International Agency for Research on Cancer, Lyon, France
• Perrin D, , ISCB Student Council Symposium, 21-JUL-07 - 21-JUL-07, Vienna, Austria
• Perrin D, Duhamel C, Ruskin HJ, Crane M, Microarray biclustering: mathematical model and metaheuristic alternatives, International Conference on Computational Methods, (ICCM2007), 04-APR-07 - 06-APR-07, Hiroshima, Japan
• Perrin D, Ruskin HJ, Crane M, An agent-based approach to immune modelling - Priming individual response, Third International Conference on Modeling and Simulation, (ICMS06), 08-DEC-06 - 10-DEC-06, Cairo, Egypt
• Perrin D, Ruskin HJ, Crane M, HIV Modelling - Parallel Implementation Strategies, Third International Conference on Cluster and Grid Computing Systems, (CGCS06)., 24-NOV-06 - 24-NOV-06, Venice, Italy
• Perrin D, Ruskin HJ, Burns J, Crane M, An agent-based approach to immune modelling, 2006 International Conference on Computational Science and its Applications, (ICCSA 2006)., 08-MAY-06 - 11-MAY-06, Glasgow, UK
• Perrin D, Ruskin HJ, Agent-Based Modelling of Viral Infection: An Introduction, BioNet 2006, 18-JAN-06 - 19-JAN-06, Tallaght, Ireland